1. RESEARCH ARTICLE PLoS Pathogens, In press Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names Douglass AP, Offei B, Braun-Galleani S, Coughlan AY, Martos AAM, Ortiz-Merino RA, Byrne KP and Wolfe KH (2018)

	2. RESEARCH ARTICLE Genome Announcements, 6: e00549-18. Draft genome sequence of the yeast Nadsonia starkeyi-henricii UCD142, isolated from forest soil in Ireland O'Boyle S, Bergin SA, Hussey ÉE, McLaughlin AD, Riddell LR, Byrne KP, Wolfe KH, O'Brien CE and Butler G (2018) Citations: PubMed Central PMID: 29930058

	3. RESEARCH ARTICLE Applied and Environmental Microbiology, 84: e02294-17. Transcriptional response to lactic acid stress in the hybrid yeast Zygosaccharomyces parabailii Ortiz-Merino RA, Kuanyshev N, Byrne KP, Varela JA, Morrissey JP, Porro D, Wolfe KH and Branduardi P (2018) Citations: Google Scholar | PubMed Central PMID: 29269498 Supplemental:   Info   Data 1   Data 2   Data 3     Data 4   Data 5   Data 6   Data 7

	4. RESEARCH ARTICLE PLoS Genetics, 13: e1007092. Flip/flop mating-type switching in the methylotrophic yeast Ogataea polymorpha is regulated by an Efg1-Rme1-Ste12 pathway Hanson SJ, Byrne KP and Wolfe KH (2017) Citations: Google Scholar | PubMed Central PMID: 29176810 Supplemental:   Figure 1   Figure 2   Figure 3   Figure 4   Figure 5     Figure 6   Figure 7   Figure 8   Figure 9   Figure 10     Table 1   Table 2   Table 3   Table 4   Table 5     Table 6   Table 7

	5. RESEARCH ARTICLE PLoS Biology, 15: e2002128. Evolutionary restoration of fertility in an interspecies hybrid yeast, by whole-genome duplication after a failed mating-type switch Ortiz-Merino RA, Kuanyshev N, Braun-Galleani S, Byrne KP, Porro D, Branduardi P and Wolfe KH (2017) Citations: Google Scholar | PubMed Central PMID: 28510588 Supplemental:   Figure 1   Figure 2   Data 1     Table 1   Table 2   Table 3

	6. RESEARCH ARTICLE Genome Biology and Evolution, 8: 2482-92. Centromeres of the yeast Komagataella phaffii (Pichia pastoris) have a simple inverted-repeat structure Coughlan AY, Hanson SJ, Byrne KP and Wolfe KH (2016) Citations: Google Scholar | PubMed Central PMID: 27497317 Supplemental:   Information

	7. REVIEW ARTICLE FEMS Yeast Research, 15: fov035. Clade- and species-specific features of genome evolution in the Saccharomycetaceae Wolfe KH, Armisén D, Proux-Wera E, ÓhÉigeartaigh SS, Azam H, Gordon JL and Byrne KP (2015) Citations: Google Scholar | PubMed Central PMID: 26066552

	8. RESEARCH ARTICLE PNAS, 111: E4851-8. Mating type switching by chromosomal inversion in methylotrophic yeasts suggests an origin for the three-locus Saccharomyces cerevisiae system Hanson SJ, Byrne KP and Wolfe KH (2014) Citations: Google Scholar | PubMed Central PMID: 25349420 Supplemental:   Information

	9. RESEARCH ARTICLE Journal of Bacteriology, 196: 2030-2042. SearchDOGS Bacteria, software that provides automated identification of potentially missed genes in annotated bacterial genomes ÓhÉigeartaigh SS, Armisén D, Byrne KP and Wolfe KH (2014) Citations: Google Scholar | PubMed Central PMID: 24659774 Supplemental:   File 1

	10. RESEARCH ARTICLE Molecular Biology and Evolution, 30: 1281-1291. Comparative genome analysis and gene finding in Candida species using CGOB Maguire S, ÓhÉigeartaigh SS, Byrne KP, Schroeder M, O'Gaora P, Wolfe KH and Butler G (2013) Citations: Google Scholar | PubMed Central PMID: 23486613 Supplemental:   Table 1

	11. RESEARCH ARTICLE Genome Biology and Evolution, 5: 525-531. Evolutionary mobility of the ribosomal DNA array in yeasts Proux-Wéra E, Byrne KP and Wolfe KH (2013) Citations: Google Scholar | PubMed Central PMID: 23419706

	12. RESEARCH ARTICLE Party Politics, 19: 985-997. What's in a name? Using surnames as data for party research Kevin Byrne and Eoin O'Malley (2013) Citations: Google Scholar Supplemental:   Methods

	13. RESEARCH ARTICLE Irish Political Studies, 28: 130-139. The two types of Ulster unionism: Testing an ethnic explanation for the unionist/loyalist divide Kevin Byrne and Eoin O'Malley (2013) Citations: Google Scholar

	14. RESEARCH ARTICLE BMC Bioinformatics, 13: 237. A pipeline for automated annotation of yeast genome sequences by a conserved-synteny approach Proux-Wéra E, Armisén D, Byrne KP and Wolfe KH (2012) Citations: Google Scholar | PubMed Central PMID: 22984983

	15. RESEARCH ARTICLE British Journal of Politics and International Relations, 14: 613-629. Politics with Hidden Bases: Unearthing the deep roots of party systems Kevin Byrne and Eoin O'Malley (2012) Citations: Google Scholar • TV: The Week In Politics, RTÉ1, 26th June 2011   "Irish political surnames may indicate party affiliation" • Press: Stephen Collins, Political Editor, Irish Times, 27th June 2011   "FF and FG tribal split traced back to 12th century" • Press: Paul O'Brien, Political Editor, Irish Examiner, 27th June 2011   "Tribal split between 'Gaelic' FF and 'English' FG names" • Op-ed: Kevin Byrne and Eoin O'Malley, Sunday Business Post, 3rd July 2011   "Tribal rift between FF and FG goes deeper than the Civil War"

	16. RESEARCH ARTICLE PNAS, 108: 20024-20029. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents Gordon JL, Armisén D, Proux-Wéra E, ÓhÉigeartaigh SS, Byrne KP and Wolfe KH (2011) Citations: Google Scholar | PubMed Central PMID: 22123960 Supplemental:   /   Information

	17. RESEARCH ARTICLE PLoS Genetics, 7: e1002190. Mechanisms of chromosome number evolution in yeast Gordon JL, Byrne KP and Wolfe KH (2011) Community Choice: A story of chromosome number (2011) Nature, 477: 9 Citations: Google Scholar | PubMed Central PMID: 21811419 • Media: Branwen Morgan, Australian Broastcasting Corporation, 22nd July 2011   "Scientists trace yeast's gene shuffle" Supplemental:   Dataset 1   Figure 1   Figure 2   Figure 3   Table 1    Table 2   Table 3   Table 4   Table 5   Table 6

	18. RESEARCH ARTICLE BMC Genomics, 12: 377. Systematic discovery of unannotated genes in 11 yeast species using a database of orthologous genomic segments OhEigeartaigh SS, Armisen D, Byrne KP and Wolfe KH (2011) Citations: Google Scholar | PubMed Central PMID: 21791067 Supplemental:   File 1

	19. RESEARCH ARTICLE BMC Genomics, 11: 290. Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser Fitzpatrick DA, O'Gaora P, Byrne KP and Butler G (2010) Citations: Google Scholar | PubMed Central PMID: 20459735 Supplemental:   File 1   File 2   File 3   File 4   File 5   Website

	20. RESEARCH ARTICLE PLoS Genetics, 5: e1000485. Additions, losses and rearrangements on the evolutionary route from a reconstructed ancestor to the modern Saccharomyces cerevisiae genome Gordon JL, Byrne KP and Wolfe KH (2009) Perspective: Sankoff D (2009) PLoS Genetics, 5: e1000483 Highlights: Neame E (2009) Nature Reviews Genetics, 10: 426 Faculty of 1000: Recommended (3.0) Citations: Google Scholar | PubMed Central PMID: 19436716 Supplemental:   Figure 1   Table 1   Table 2

	21. RESEARCH ARTICLE PNAS, 104: 8397-8402. Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication Scannell DR, Frank AC, Conant GC, Byrne KP, Woolfit M and Wolfe KH (2007) Faculty of 1000: Must Read (6.0) Citations: Google Scholar | PubMed Central PMID: 17494770 Supplemental:   /   Information

	22. RESEARCH ARTICLE Genetics, 175: 1341-1350. Consistent patterns of rate asymmetry and gene loss indicate widespread neo-functionalization of yeast genes after whole-genome duplication Byrne KP and Wolfe KH (2007) Issue Highlights: Genetics, 2007; 175: NP Citations: Google Scholar | PubMed Central PMID: 17194778 Supplemental:   Information

	23. RESEARCH ARTICLE Nature, 440: 341-345. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts Scannell DR*, Byrne KP*, Gordon JL, Wong S and Wolfe KH (2006) Faculty of 1000: Must Read (6.5) Citations: Google Scholar | PubMed Central PMID: 16541074 • Press: Dick Ahlstrom, Science Editor, Irish Times, 3rd March 2006   "Demonstrating the origin of a species" * These authors contributed equally to this work. Supplemental:   Table 1   Note 2   Note 3   Note 4   Note 5

	24. RESEARCH ARTICLE Nucleic Acids Research, 34: D452-455. Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser Byrne KP and Wolfe KH (2006) Citations: Google Scholar | PubMed Central PMID: 16381909

	25. RESEARCH ARTICLE Molecular Biology and Evolution, 23: 245-253. Rate asymmetry and adaptive evolution after genome duplication causes substantial long branch attraction artifacts in the phylogeny of Saccharomyces species Fares MA, Byrne KP and Wolfe KH (2006) Faculty of 1000: Must Read (6.0) Citations: Google Scholar | PubMed Central PMID: 16207937 Supplemental:   Table 1

	26. REVIEW ARTICLE Current Bioinformatics, 1: 131-146. Computational analyses of ancient polyploidy Byrne KP and Blanc G (2006) Citations: Google Scholar

	27. RESEARCH ARTICLE Genome Research, 15: 1456-1461. The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species Byrne KP and Wolfe KH (2005) Citations: Google Scholar | PubMed Central PMID: 16169922 Supplemental:   Methods   Table 1   Table 2   Data   Website

	28. CONFERENCE PROCEEDINGS Fifth Workshop on QCD, 346-353 The spin dependence of swift proton collisions AT Bates, NH Buttimore and KP Byrne (2000) Proceedings of the Fifth Workshop on Quantum Chromodynamics, (eds. HM Fried, B Muller and Y Gabellini), pp. 346-353. Villefranche-sur-Mer, France, 3-7 Jan 2000. World Scientific, Singapore. inSPIRE: 549767